The ClassMarker Main Window
    The ArrayMiner ClassMarker’s main interface consists of a single window that contains multiple tabs.

    There are two kinds of tab:

  • The Master Tab is always accessible and is always the leftmost tab in the window. It is used to prepare your data for analysis (this tab is shown by the A arrow in the figure below).
  • The Result Tabs, each showing the result of an analysis initiated from the Master Tab (there are three Result Tabs in the figure, shown by the B arrows).

  
ClassMarker interface

  • A : The selected tab, in this case this is the Master Tab.
  • B : The Result Tabs, these are result tabs, you can rename them by double clicking on them.
  • C: These are the main controls of the master tab, green buttons are for filtering and reordering of data, red ones are for analyzing (more on this).
  • D: This part contains preferences for the currently selected view of your data. In this case, this will expand/shrink the size of each rectangle in the heat map (more on this).
  • E: You will find in most cases the genes vertically and the experiments horizontally.
  • F: This is the selected class, shown by a red arrow in the master tab and by a blue one in result tabs. Learn more on class selection here.
  • G: This part shows details about the selected class and the available actions for it.
  • H: These two buttons determine the view of the bottom table. In most cases, you can choose between the experiment table and the gene table.
  • I: This gene didn’t pass the filtering and is excluded from analysis.
  • J:This is the classmarker window footer.
  • L: These two buttons maximize and minimize frames.
  • K: Drag this box to resize frames.
  • M: This anchor can be dragged to move a class separator and modify the class position.(Master Tab only). To learn more on class creation click here.