• To learn more on the A part click here
• To learn more on the B part click here
• To learn more on the C part click here

The A Part

• The "Heat Mode" button allows you to switch toa heat map view of the data.
• The "2D Mode" button allows you to switch to a 2 dimensional view of the data.
• The "3D" button allows you to switch to a 3 dimensional view of the data.
  

The B Part

• The color rule gives you the link between a color and a level of activity used in the Heat Mode Panel. You can click on the color rule to change the scale, or turn the mouse wheel when the mouse pointer is on the scale, to lighten or darken the colors.
• The heat map size y allows you to change the height of the heat map panel.
• The "Norm", "Full" and "Choose" buttons let you control the vertical scale used in the Profile Panel.
• The "Min/Max" button switches between showing in the Profile Panel the profiles of all genes in the selected cluster ("Min/Max" unselected), or the envelope (maxima and minima) of the genes in the cluster ("Min/Max" selected).
• The "Fit color" button shows the profiles in the Profile Panel in colors that depend on the value of the fit of the gene within its cluster.
• The "Clusters" button governs what is shown in the Profile Panel. When not selected (as in the figure above), the Profile Panel shows the profiles of the genes in the selected cluster. When "Clusters" is selected, the Profile Panel shows the average profile of all clusters, a view useful for assessing the differences between clusters.